National Center for Biotechnology Information (NCBI) Welcome to the blast2 network service. PEPTIDE SEQUENCE DATABASES nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR month All new or revised GenBank CDS translation+PDB+SwissProt+PIR sequences released in the last 30 days pdb PDB protein sequences yeast Yeast (Saccharomyces cerevisiae) protein sequences. kabat Kabat Sequences of Proteins of Immunological Interest alu * Translations of Select Alu Repeats from REPBASE swissprot SwissProt sequences NUCLEOTIDE SEQUENCE DATABASES nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or STS's) month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in the last 30 days yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences. est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division pdb PDB nucleotide sequences vector Vector subset of GenBank mito * Database of mitochondrial sequences, Rel. 1.0, July 1995 gss Genome Survey Sequences (includes single-pass genomic data, exon- trapped sequences, and Alu PCR primers. kabat Kabat Sequences of Nucleic Acid of Immunological Interest epd Eukaryotic Promotor Database alu *+ Select Alu Repeats from REPBASE Waiting for 1 jobs to finish BLASTN 1.4.9MP [26-March-1996] [Build 14:27:07 Apr 1 1996] Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Notice: this program and its default parameter settings are optimized to find nearly identical sequences rapidly. To identify weak similarities encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX. Query= tmpseq_1 (424 letters) Database: Non-redundant Database of GenBank EST Division 1,334,370 sequences; 492,793,146 total letters. Searching..................................................done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gb|AA666429|AA666429 SWOvL3CAN01A08SK Onchocerca volvulu... 2069 4.2e-167 1 gb|AA610978|AA610978 SWOvL3CA335SK Onchocerca volvulus i... 869 2.3e-135 2 gb|AA585557|AA585557 SW3D9CA148SK SAW97MLW-BmL3d9 Brugia... 1660 5.7e-133 1 dbj|C44371|C44371 C.elegans cDNA clone yk343f1 : 5' e... 840 1.9e-75 2 dbj|C46287|C46287 C.elegans cDNA clone yk416b8 : 5' e... 970 2.0e-75 1 gb|R03267|R03267 pk05e04.s1 Caenorhabditis briggsae ... 917 5.2e-71 1 dbj|C66376|C66376 C.elegans cDNA clone yk207a2 : 5' e... 911 1.5e-70 1 dbj|C39436|C39436 C.elegans cDNA clone yk210e7 : 5' e... 910 1.9e-70 1 dbj|C66286|C66286 C.elegans cDNA clone yk206c4 : 5' e... 785 4.4e-70 2 dbj|C40006|C40006 C.elegans cDNA clone yk228a9 : 5' e... 897 2.3e-69 1 dbj|D69456|CELK070B5F C.elegans cDNA clone yk70b5 : 5' en... 891 7.3e-69 1 dbj|C70009|C70009 C.elegans cDNA clone yk377a3 : 5' e... 880 6.0e-68 1 gb|T00780|T00780 wEST01501 Caenorhabditis elegans cD... 835 3.5e-64 1 gb|AA257306|AA257306 MB4SLM1D11T3 Brugia malayi L4 JHU93... 752 7.4e-56 1 dbj|D68730|CELK055A2F C.elegans cDNA clone yk55a2 : 5' en... 617 1.2e-42 1 gb|M79503|M79503 wEST00040 Caenorhabditis elegans cD... 567 2.1e-38 1 dbj|D68727|CELK055AXF C.elegans cDNA clone yk55a10 : 5' e... 541 1.8e-37 1 gb|M79609|M79609 wEST00146 Caenorhabditis elegans cD... 457 1.3e-29 1 gb|M79610|M79610 wEST00147 Caenorhabditis elegans cD... 428 2.4e-26 1 dbj|D69675|CELK072F7F C.elegans cDNA clone yk72f7 : 5' en... 398 3.9e-25 1 emb|F00822|HSB66G112 H. sapiens partial cDNA sequence; c... 382 5.0e-22 1 gb|AA176790|AA176790 zp36d12.r1 Stratagene muscle 937209... 365 2.3e-20 1 gb|AA165802|AA165802 ms37e09.r1 Stratagene mouse heart (... 304 2.5e-15 1 gb|AA305266|AA305266 EST176255 Colon carcinoma (Caco-2) ... 304 3.0e-15 1 gb|AA075613|AA075613 zm70f12.r1 Stratagene neuroepitheli... 304 3.1e-15 1 gb|AA325648|AA325648 EST28666 Cerebellum II Homo sapiens... 297 1.1e-14 1 gb|AA312355|AA312355 EST183030 Jurkat T-cells VI Homo sa... 288 6.5e-14 1 gb|AA352514|AA352514 EST60515 Activated T-cells XX Homo ... 268 3.7e-13 1 emb|F14809|SSC20D03 S.scrofa mRNA; expressed sequence t... 259 1.6e-11 1 gb|T28648|T28648 EST50506 Homo sapiens cDNA 5' end s... 251 7.7e-11 1 gb|AA102247|AA102247 zn61f05.r1 Stratagene muscle 937209... 249 1.1e-10 1 gb|AA086143|AA086143 zl84g06.r1 Stratagene colon (#93720... 238 1.2e-09 1 gb|AA263523|AA263523 LD06602.5prime LD Drosophila Embryo... 237 1.5e-09 1 gb|AA567134|AA567134 GM01177.5prime GM Drosophila Ovary ... 231 3.5e-09 1 gb|AA567410|AA567410 HL01145.5prime HL Drosophila Head D... 231 4.9e-09 1 gb|AA264157|AA264157 LD07793.5prime LD Drosophila Embryo... 231 5.1e-09 1 emb|F00797|HSB63F082 H. sapiens partial cDNA sequence; c... 225 1.3e-08 1 gb|AA082548|AA082548 ze89a09.r1 Soares fetal heart NbHH1... 219 2.5e-08 1 gb|AA180507|AA180507 zp53e10.r1 Stratagene NT2 neuronal ... 220 3.9e-08 1 gb|N28063|N28063 EST000017 Schistosoma mansoni cDNA ... 196 4.0e-06 1 gb|AA070556|AA070556 zm70d06.r1 Stratagene neuroepitheli... 194 6.2e-06 1 gb|AA071217|AA071217 zm73b02.r1 Stratagene neuroepitheli... 189 1.6e-05 1 gb|AA371300|AA371300 EST83071 Prostate gland I Homo sapi... 187 2.0e-05 1 gb|AA084227|AA084227 zn03c11.r1 Stratagene hNT neuron (#... 185 3.0e-05 1 gb|AA172281|AA172281 zp29d08.r1 Stratagene neuroepitheli... 183 5.1e-05 1 gb|AA196229|AA196229 zp98d01.r1 Stratagene muscle 937209... 174 0.00026 1 gb|AA192706|AA192706 zp93d11.r1 Stratagene muscle 937209... 167 0.0011 1 gb|AA381774|AA381774 EST94892 Activated T-cells I Homo s... 145 0.071 1 gb|AA126166|AA126166 zm78c01.r1 Stratagene neuroepitheli... 143 0.12 1 gb|W26243|W26243 26g6 Human retina cDNA randomly pri... 133 0.60 1 >gb|AA666429|AA666429 SWOvL3CAN01A08SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CAN01A08 5' Length = 644 Plus Strand HSPs: Score = 2069 (571.7 bits), Expect = 4.2e-167, P = 4.2e-167 Identities = 418/424 (98%), Positives = 418/424 (98%), Strand = Plus / Plus Query: 1 AACAAATTGAAACAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCG 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1 AACAAATTGAAACAATAAACAGAANCAAAAATGGATGCGATCAAGAAAAAGATGCAGGCG 60 Query: 61 ATGAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ATGAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGT 120 Query: 121 CAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATG 180 Query: 181 ATGCNAACTGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTGTTGCAAATACCAAC 240 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 181 ATGCAAACTGAAAATGATTTAGATAAGGCACAGGAAGATTTATCTGTTGCAAATACCAAC 240 Query: 241 TTGGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 TTGGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGT 300 Query: 301 CGTATGACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 CGTATGACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACG 360 Query: 361 GATAAATTGGAAGAAGCAACACATACAGCTGATGAATCTGAACGTGTTCGCNAGGTTATG 420 |||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 361 GATAAATTGGAANAAGCAACACATACNGCTGATGAATCTGAACGTGTTCGCAAGGTTATG 420 Query: 421 GAAA 424 |||| Sbjct: 421 GAAA 424 Score = 124 (34.3 bits), Expect = 5.3, P = 0.99 Identities = 28/32 (87%), Positives = 28/32 (87%), Strand = Plus / Plus Query: 314 TGGAAGAGGAATTGGAACGAGCTGAGGAACGT 345 | |||| ||| |||||||||||||| |||||| Sbjct: 545 TTGAAGCGGATTTGGAACGAGCTGAAGAACGT 576 >gb|AA610978|AA610978 SWOvL3CA335SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SW3ICO335 5' Length = 533 Plus Strand HSPs: Score = 869 (240.1 bits), Expect = 2.3e-135, Sum P(2) = 2.3e-135 Identities = 175/178 (98%), Positives = 175/178 (98%), Strand = Plus / Plus Query: 247 GATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATG 306 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 183 GATANGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCAGCCCTGAATCGTCGTATG 242 Query: 307 ACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAA 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 ACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAA 302 Query: 367 TTGGAAGAAGCAACACATACAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 303 TTGGAAGAAGCAACACATACAGCTGATGAATCTGAACGTGTTCGCAAGGTTATGGAAA 360 Score = 837 (231.3 bits), Expect = 2.3e-135, Sum P(2) = 2.3e-135 Identities = 171/179 (95%), Positives = 171/179 (95%), Strand = Plus / Plus Query: 1 AACAAATTGAAACAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCG 60 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 7 AACAAATTGAAACAATAAACAGANACAAAAATGGATGCGATCAAGAANAAGATGCAGGCG 66 Query: 61 ATGAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 ATGAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGT 126 Query: 121 CAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGAT 179 ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| Sbjct: 127 CAAATGACGGANNNGTTGGAACGAATCGAGGANGAACTACGTGATACCCAGAAAGNGAT 185 Score = 84 (23.2 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66 Identities = 20/24 (83%), Positives = 20/24 (83%), Strand = Plus / Plus Query: 312 TCTGGAAGAGGAATTGGAACGAGC 335 | || ||| ||| ||||||||||| Sbjct: 481 TTTGAAAGCGGATTTGGAACGAGC 504 >gb|AA585557|AA585557 SW3D9CA148SK SAW97MLW-BmL3d9 Brugia malayi cDNA clone SW3D9CA148 5' Length = 504 Plus Strand HSPs: Score = 1660 (458.7 bits), Expect = 5.7e-133, P = 5.7e-133 Identities = 358/392 (91%), Positives = 358/392 (91%), Strand = Plus / Plus Query: 13 CAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAG 72 | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37 CTATAAACTAAAGCAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAG 96 Query: 73 AAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAA 132 |||||||| |||||||||||||||||||| || ||||||||||| || |||||||| || Sbjct: 97 AAGGATAATGCTCTCGATCGAGCCGATGCTGCAGAAGAAAAAGTGCGACAAATGACAGAT 156 Query: 133 AAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAA 192 || ||||||||||| ||||||||||| || |||||||| || || ||||||| ||| || Sbjct: 157 AAATTGGAACGAATTGAGGAAGAACTTCGAGATACCCACAAGAAAATGATGCAAACAGAG 216 Query: 193 AATGATTTAGATAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATAAG 252 |||||||||||||||||||| || |||||| ||||||||||||| || |||||||| ||| Sbjct: 217 AATGATTTAGATAAAGCACAAGAGGATTTAGCTGTTGCAAATACTAATTTGGAAGAGAAG 276 Query: 253 GAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTT 312 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 277 GAAAAGAAAGTTCAGGAGGCGGAGGCTGAGGTAGCAGCCCTGAATCGTCGTATGACACTT 336 Query: 313 CTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAA 372 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 337 CTGGAAGAGGAATTGGAACGAGCAGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAA 396 Query: 373 GAAGCAACACATACAGCTGATGAATCTGAACG 404 |||||||| | ||||||||||||||| |||| Sbjct: 397 GAAGCAACTCCTACAGCTGATGAATCCNAACG 428 >dbj|C44371|C44371 C.elegans cDNA clone yk343f1 : 5' end, single read Length = 360 Plus Strand HSPs: Score = 840 (232.1 bits), Expect = 1.9e-75, Sum P(2) = 1.9e-75 Identities = 232/315 (73%), Positives = 232/315 (73%), Strand = Plus / Plus Query: 63 GAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCA 122 ||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| Sbjct: 44 GAAGATCGAGAAGGACAACGCTCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCA 103 Query: 123 AATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGAT 182 || || || ||| | ||| || |||||||||| || | || |||||||| ||||||| Sbjct: 104 GATCACCGAGAAGCTCGAAAGAGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGAC 163 Query: 183 GCNAACTGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTT 242 | || | | | ||||| || || || ||||| || | || | || | |||| | Sbjct: 164 TCAGACCGGAGACGATTTGGACAAGGCTCAGGAGGACCTCTCCGCCGCCACCTCCAAGCT 223 Query: 243 GGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCG 302 || || ||||| |||| ||||||||||| ||||||||||| || | |||| ||||| Sbjct: 224 CGAGGAGAAGGAGAAGACCGTTCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCG 283 Query: 303 TATGACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGA 362 |||| || || || || || | || |||| ||||| ||| ||||||| || || || Sbjct: 284 CNTGACCCTCCTCGAGGAAGAGCTCGAGAGAGCCGAGGAGCGTCTGAAGATCGCCACCGA 343 Query: 363 TAAATTGGAAGAAGC 377 || | || | || Sbjct: 344 GAANCTCGANTANGC 358 Score = 145 (40.1 bits), Expect = 1.9e-75, Sum P(2) = 1.9e-75 Identities = 35/43 (81%), Positives = 35/43 (81%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAA 66 | ||| |||||| || || ||||| ||||||||||| ||| || Sbjct: 4 ACCAANAATGGACGCCATTAAGAAGAAGATGCAGGCCATGGAA 46 >dbj|C46287|C46287 C.elegans cDNA clone yk416b8 : 5' end, single read Length = 360 Plus Strand HSPs: Score = 970 (268.0 bits), Expect = 2.0e-75, P = 2.0e-75 Identities = 258/339 (76%), Positives = 258/339 (76%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGC 83 | |||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 21 ACCAAAAATGGACGCCATTAAGAAGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGC 80 Query: 84 TCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACG 143 ||||||||| ||||||||||| ||||| ||||| ||||| || || || ||| | ||| | Sbjct: 81 TCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCAGATCACCGAGAAGCTCGAAAG 140 Query: 144 AATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGA 203 | |||||||||| || | || |||||||| ||||||| | || | | | ||||| || Sbjct: 141 AGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGACTCAGACCGGAGACGATTTGGA 200 Query: 204 TAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGT 263 || || ||||| || | || | || | |||| | || || ||||| |||| || Sbjct: 201 CAAGGCTCAGGAGGACCTCTCCGCCGCCACCTCCAAGCTCGAGGAGAAGGAGAAGACCGT 260 Query: 264 TCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGA 323 ||||||||| ||||||||||| || | |||| ||||| ||||| || || || || || Sbjct: 261 TCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCGCATGACCCTCCTCGAGGAAGA 320 Query: 324 ATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGA 362 | || |||| ||||| ||| ||||||| || || || Sbjct: 321 GCTCGAGAGAGCCGAGGAGCGTCTGAAGATCGCCACCGA 359 >gb|R03267|R03267 pk05e04.s1 Caenorhabditis briggsae cDNA similar to SP:TPMM_TRICO P15846 TROPOMYOSIN,. Length = 350 Plus Strand HSPs: Score = 917 (253.4 bits), Expect = 5.2e-71, P = 5.2e-71 Identities = 243/320 (75%), Positives = 243/320 (75%), Strand = Plus / Plus Query: 47 AAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGG 106 | ||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| | Sbjct: 1 AGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGCTCTCGATCGTGCCGATGCCGCTG 60 Query: 107 AAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGATA 166 |||| || || ||||| || || |||||| | || || |||||||||| || | || | Sbjct: 61 AAGAGAAGGTCCGTCAGATCACCGAAAAGCTCGAGAGAGTCGAGGAAGAGCTCAGAGACA 120 Query: 167 CCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTG 226 ||||||| ||||||| | || | | | ||||| ||||| || || ||||| | || | Sbjct: 121 CCCAGAAGAAGATGACTCAGACCGGAGACGATTTGGATAAGGCCCAAGAAGACCTCTCGG 180 Query: 227 TTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAG 286 || | | |||| | || || ||||| |||| || || ||||| ||||||||||| | Sbjct: 181 CCGCCACTTCCAAGCTCGAGGAGAAGGAGAAGACCGTCCAGGAGGCTGAGGCTGAGGTCG 240 Query: 287 CANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTT 346 | | |||| ||||||||||| ||||| |||||||| | || || || |||| ||| Sbjct: 241 CCTCGTTGAACCGTCGTATGACCCTTCTTGAAGAGGAGCTCGAGAGANCTNAGGAGCGTC 300 Query: 347 TGAAGATTGCAACGGATAAA 366 ||||| | || || || ||| Sbjct: 301 TGAAGNTCGCCACCGAGAAA 320 >dbj|C66376|C66376 C.elegans cDNA clone yk207a2 : 5' end, single read Length = 374 Plus Strand HSPs: Score = 911 (251.7 bits), Expect = 1.5e-70, P = 1.5e-70 Identities = 243/320 (75%), Positives = 243/320 (75%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGC 83 | |||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 55 ACCAAAAATGGACGCCATTAAGAAGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGC 114 Query: 84 TCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACG 143 ||||||||| ||||||||||| ||||| ||||| ||||| || || || ||| | ||| | Sbjct: 115 TCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCAGATCACCGAGAAGCTCGAAAG 174 Query: 144 AATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGA 203 | |||||||||| || | || |||||||| ||||||| | || | | | ||||| || Sbjct: 175 AGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGACTCAGACCGGAGACGATTTGGA 234 Query: 204 TAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGT 263 || || ||||| || | || | || | |||| | || || ||||| |||| || Sbjct: 235 CAAGGCTCAGGAGGACCTCTCCGCCGCCACCTCCAAGCTCGAGGAGAAGGAGAAGACCGT 294 Query: 264 TCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGA 323 ||||||||| ||||||||||| || | |||| ||||| ||||| || || || || || Sbjct: 295 TCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCGCATGACCCTCCTCGAGGAAGA 354 Query: 324 ATTGGAACGAGCTGAGGAAC 343 | || |||| ||||| | Sbjct: 355 GCTCGAGAGAGCCGAGGAGC 374 >dbj|C39436|C39436 C.elegans cDNA clone yk210e7 : 5' end, single read Length = 360 Plus Strand HSPs: Score = 910 (251.4 bits), Expect = 1.9e-70, P = 1.9e-70 Identities = 242/318 (76%), Positives = 242/318 (76%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGC 83 | |||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 43 ACCAAAAATGGACGCCATTAAGAAGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGC 102 Query: 84 TCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACG 143 ||||||||| ||||||||||| ||||| ||||| ||||| || || || ||| | ||| | Sbjct: 103 TCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCAGATCACCGAGAAGCTCGAAAG 162 Query: 144 AATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGA 203 | |||||||||| || | || |||||||| ||||||| | || | | | ||||| || Sbjct: 163 AGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGACTCAGACCGGAGACGATTTGGA 222 Query: 204 TAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGT 263 || || ||||| || | || | || | |||| | || || ||||| |||| || Sbjct: 223 CAAGGCTCAGGAGGACCTCTCCGCCGCCACCTCCAAGCTCGAGGAGAAGGAGAAGACCGT 282 Query: 264 TCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGA 323 ||||||||| ||||||||||| || | |||| ||||| ||||| || || || || || Sbjct: 283 TCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCGCATGACCCTCCTCGAGGAAGA 342 Query: 324 ATTGGAACGAGCTGAGGA 341 | || |||| ||||| Sbjct: 343 GCTCGAGAGAGCCGAGGA 360 >dbj|C66286|C66286 C.elegans cDNA clone yk206c4 : 5' end, single read Length = 360 Plus Strand HSPs: Score = 785 (216.9 bits), Expect = 4.4e-70, Sum P(2) = 4.4e-70 Identities = 215/290 (74%), Positives = 215/290 (74%), Strand = Plus / Plus Query: 67 ATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATG 126 ||||||||||| ||||||||||||| ||||||||||| ||||| ||||| ||||| || Sbjct: 71 ATCGAGAAGGACNACGCTCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCAGATC 130 Query: 127 ACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNA 186 || || ||| | ||| || |||||||||| || | || ||||||| ||||||| | Sbjct: 131 ACCGAGAAGCTCGAAAGAGTCGAGGAAGAGCTCAGAGACNCCCAGAAGAAGATGACTCAG 190 Query: 187 ACTGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAA 246 || | | | ||||| || || || ||||| || | || | || | |||| | || Sbjct: 191 ACCGGAGACGATTTGGACAAGGCTCAGGAGGACCTCTCCGCCGCCACCTCCAAGCTCGAG 250 Query: 247 GATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATG 306 || ||||| |||| ||||||||||| ||||||||||| || | ||| ||||| ||| Sbjct: 251 GAGAAGGAGAAGACCGTTCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGATCCGTCGCATG 310 Query: 307 ACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGC 356 || || || || || || | || |||| ||||| ||| ||||||| || Sbjct: 311 ACCCTCCTCGAGGAAGAGCTCGANAGAGCCGAGGAGCGTCTGAAGATCGC 360 Score = 135 (37.3 bits), Expect = 4.4e-70, Sum P(2) = 4.4e-70 Identities = 33/42 (78%), Positives = 33/42 (78%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAA 65 | |||| ||||| || || |||| ||||||||||| ||| | Sbjct: 27 ACCAAANATGGACGCCATTNAGAAGAAGATGCAGGCCATGNA 68 >dbj|C40006|C40006 C.elegans cDNA clone yk228a9 : 5' end, single read Length = 360 Plus Strand HSPs: Score = 897 (247.9 bits), Expect = 2.3e-69, P = 2.3e-69 Identities = 241/319 (75%), Positives = 241/319 (75%), Strand = Plus / Plus Query: 46 AAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCG 105 || ||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 42 AAGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGCTCTCGATCGTGCCGATGCCGCT 101 Query: 106 GAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGAT 165 ||||| ||||| ||||| || || || ||| | ||| || |||||||||| || | || Sbjct: 102 GAAGAGAAAGTCCGTCAGATCACCGAGAAGCTCGAAAGAGTCGAGGAAGAGCTCAGAGAC 161 Query: 166 ACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGATAAAGCACAGGAAGATTTATCT 225 |||||||| ||||||| | || | | | ||||| || || || ||||| || | || Sbjct: 162 ACCCAGAAGAAGATGACTCAGACCGGAGACGATTTGGACAAGGCTCAGGAGGACCTCTCC 221 Query: 226 GTTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTA 285 | || | |||| | || || ||||| |||| ||||||||||| ||||||||||| Sbjct: 222 GCCGCCACCTCCAAGCTCGAGGAGAAGGAGAAGACCGTTCAAGAGGCTGAGGCTGAGGTC 281 Query: 286 GCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGT 345 || | |||| ||||| ||||| || || || || || | || |||| ||||| ||| Sbjct: 282 GCTTCTTTGAACCGTCGCATGACCCTCCTCGAGGAAGAGCTCGAGAGAGCCGAGGAGCGT 341 Query: 346 TTGAAGATTGCAACGGATA 364 ||||||| || || || | Sbjct: 342 CTGAAGATCGCCACCGAGA 360 >dbj|D69456|CELK070B5F C.elegans cDNA clone yk70b5 : 5' end, single read. Length = 360 Plus Strand HSPs: Score = 891 (246.2 bits), Expect = 7.3e-69, P = 7.3e-69 Identities = 251/346 (72%), Positives = 251/346 (72%), Strand = Plus / Plus Query: 79 AACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTG 138 |||||||||||||| ||||||||||| ||||| ||||| ||||| || || || ||| | Sbjct: 2 AACGCTCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCAGATCACCGAGAAGCTC 61 Query: 139 GAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGAT 198 ||| || |||||||||| || | || |||||||| ||||||| | || | | | ||| Sbjct: 62 GAAAGAGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGACTCAGACCGGAGACGAT 121 Query: 199 TTAGATAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATAAGGAAAAG 258 || || || || ||||| || | || | || | |||| | || || ||||| ||| Sbjct: 122 TTGGACAAGGCTCAGGAGGANCTCTCCGCCGCCACCTCCAAGCTCGAGGAGAAGGAGAAG 181 Query: 259 AAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAA 318 | | ||||||||| ||||||||||| || | |||| ||||| ||||| || || || Sbjct: 182 ACCGNTCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCGNATGACCCTCCTCGAG 241 Query: 319 GAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCA 378 || || | || |||| ||||| || | ||||| || || || || | ||||| || Sbjct: 242 GAAGAGCTCGAGAGAGCCGAGGAGNGTCTNAAGATCGCCACCGAGAAGCTCGAAGAGGCT 301 Query: 379 ACACATACAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 || || | | || || ||||| || || ||| |||||||||| | Sbjct: 302 ACCCACAATGTCGACGAGTCTGAGCGCGTGCGCAAGGTTATGGAGA 347 >dbj|C70009|C70009 C.elegans cDNA clone yk377a3 : 5' end, single read Length = 360 Plus Strand HSPs: Score = 880 (243.2 bits), Expect = 6.0e-68, P = 6.0e-68 Identities = 236/312 (75%), Positives = 236/312 (75%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGC 83 | |||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 21 ACCAAAAATGGACGCCATTAAGAAGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGC 80 Query: 84 TCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACG 143 ||||||||| ||||||||||| ||||| ||||| ||||| || || || ||| | ||| | Sbjct: 81 TCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCAGATCACCGAGAAGCTCGAAAG 140 Query: 144 AATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGA 203 | |||||||||| || | || |||||||| ||||||| | || | | | ||||| || Sbjct: 141 AGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGACTCAGACCGGAGACGATTTGGA 200 Query: 204 TAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGT 263 || || ||||| || | || | || | |||| | || || ||||| |||| || Sbjct: 201 CAAGGCTCAGGAGGACCTCTCCGCCGCCACCTCCAAGCTCGAGGAGAAGGAGAAGACCGT 260 Query: 264 TCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGA 323 ||||||||| ||||||||||| || | |||| ||||| ||||| || || || || || Sbjct: 261 TCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCGCATGACCCTCCTCGAGGAAGA 320 Query: 324 ATTGGAACGAGC 335 | || || | Sbjct: 321 GCTCGAGAGACC 332 >gb|T00780|T00780 wEST01501 Caenorhabditis elegans cDNA clone CEESI90 similar to Tropomyosin. Length = 344 Minus Strand HSPs: Score = 835 (230.7 bits), Expect = 3.5e-64, P = 3.5e-64 Identities = 219/288 (76%), Positives = 219/288 (76%), Strand = Minus / Plus Query: 311 AGTGTCATACGACGATTCAGGGNTGCTACCTCAGCCTCCGCCTCTTGAACTTTCTTTTCC 252 || ||||| ||||| |||| | || ||||||||||| ||||||||||| |||| ||| Sbjct: 1 AGGGTCATGCGACGGTTCAAAGAAGCGACCTCAGCCTCAGCCTCTTGAACGGTCTTCTCC 60 Query: 251 TTATCTTCCAAGTTGGTATTTGCAACAGATAAATCTTCCTGTGCTTTATCTAAATCATTT 192 || || || | |||| | || | || | || ||||| || || || ||||| | | Sbjct: 61 TTCTCCTCGAGCTTGGAGGTGGCGGCGGAGAGGTCCTCCTGAGCCTTGTCCAAATCGTNT 120 Query: 191 TCAGTTNGCATCATCTTTTTCTGGGTATCACGTAGTTCTTCCTCGATTCGTTCCAACTTT 132 | || | ||||||| |||||||| | | || |||||||||| || ||| | ||| Sbjct: 121 CCGGTCTGANTCATCTTCTTCTGGGTGTNTCTNAGCTCTTCCTCGACTCTTTCGAGCTTC 180 Query: 131 TCCGTCATTTGACGTACTTTTTCTTCCGCGGCATCGGCTCGATCGAGAGCGTTATCCTTC 72 || || || ||||| ||||||| ||| ||||||||||| ||||||| ||| || |||||| Sbjct: 181 TCGGTGATCTGACGGACTTTTTNTTCAGCGGCATCGGCACGATCGANAGCTTTGTCCTTC 240 Query: 71 TCGATTTTCATCGCCTGCATCTTTTTCTTGATCGCATCCATTTTTGTT 24 ||||| ||||| ||||||||||| ||||| || || |||||||||| | Sbjct: 241 TCGATCTTCATGGCCTGCATCTTCTTCTTAATGGCGTCCATTTTTGGT 288 >gb|AA257306|AA257306 MB4SLM1D11T3 Brugia malayi L4 JHU93SL-BmL4 Brugia malayi cDNA clone 4SLM1D11 5' Length = 225 Plus Strand HSPs: Score = 752 (207.8 bits), Expect = 7.4e-56, P = 7.4e-56 Identities = 166/186 (89%), Positives = 166/186 (89%), Strand = Plus / Plus Query: 13 CAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAG 72 | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40 CTATAAACTAAAGCAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAG 99 Query: 73 AAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAA 132 |||||||| |||||||||||||||||||| || ||||||||||| || |||||||| || Sbjct: 100 AAGGATAATGCTCTCGATCGAGCCGATGCTGCAGAAGAAAAAGTGCGACAAATGACAGAT 159 Query: 133 AAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAA 192 || ||||||||||| ||||||||||| || ||||||||||| || ||||||| ||| || Sbjct: 160 AAATTGGAACGAATTGAGGAAGAACTTCGAGATACCCAGAAGAAAATGATGCCAACAGAG 219 Query: 193 AATGAT 198 |||||| Sbjct: 220 AATGAT 225 >dbj|D68730|CELK055A2F C.elegans cDNA clone yk55a2 : 5' end, single read. Length = 360 Plus Strand HSPs: Score = 617 (170.5 bits), Expect = 1.2e-42, P = 1.2e-42 Identities = 187/269 (69%), Positives = 187/269 (69%), Strand = Plus / Plus Query: 131 AAAAGTTGGAACGAATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTG 190 | ||| | ||| || |||||||||| || | || |||||||| ||||||| | || | Sbjct: 1 AGAAGCTCGAAAGAGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGACTCAGACCG 60 Query: 191 AAAATGATTTAGATAAAGCACAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATA 250 | | ||||| || || || ||||| || | || | || | |||| | || || | Sbjct: 61 GAGACGATTTGGACAAGGCTCAGGAGGACCTCTCCGCCGCCACCTCCAAGCTCGAGGAGA 120 Query: 251 AGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACAC 310 |||| |||| | ||||||||| ||||||||||| || | |||| ||||| ||||| | Sbjct: 121 AGGAGAAGACCGNTCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCGNATGACCC 180 Query: 311 TTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGG 370 | || || || || | || |||| ||||| || ||||||| || || || || | | Sbjct: 181 TCCTCGAGGAAGAGCTCGAGAGAGCCGAGGAGNGTCTGAAGATCGCCACCGAGAAGCTCG 240 Query: 371 AAGAAGCAACACATACAGCTGATGAATCT 399 |||| || || || | | || || ||| Sbjct: 241 AAGAGGCTACCCACAATGTCGACGAGTCT 269 >gb|M79503|M79503 wEST00040 Caenorhabditis elegans cDNA clone CEMSA23 similar to Tropomyosin. Length = 330 Plus Strand HSPs: Score = 567 (156.7 bits), Expect = 2.1e-38, P = 2.1e-38 Identities = 145/185 (78%), Positives = 145/185 (78%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGC 83 | |||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 25 ACCAAAAATGGACGCCATTAAGAAGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGC 84 Query: 84 TCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACG 143 ||||||||| ||||||||||| ||||| ||||| ||||| || || || ||| | ||| | Sbjct: 85 TCTCGATCGTGCCGATGCCGCTGAAGAGAAAGTCCGTCAGATCACCGAGAAGCTCGAAAG 144 Query: 144 AATCGAGGAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGA 203 | |||||||||| || | || |||||||| ||||||| | || | | | | || | Sbjct: 145 AGTCGAGGAAGAGCTCAGAGACACCCAGAAGAAGATGACTCAGACCGGAGACGGATTTGG 204 Query: 204 TAAAG 208 ||| Sbjct: 205 ACAAG 209 >dbj|D68727|CELK055AXF C.elegans cDNA clone yk55a10 : 5' end, single read. Length = 243 Plus Strand HSPs: Score = 541 (149.5 bits), Expect = 1.8e-37, P = 1.8e-37 Identities = 167/243 (68%), Positives = 167/243 (68%), Strand = Plus / Plus Query: 157 CTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGATAAAGCACAGGAA 216 || | || |||||||| ||||||| | || | | | ||||| || || || ||||| Sbjct: 1 CTCAGAGACACCCAGAAGAAGATGACTCAGACCGGAGACGATTTGGACAAGGCTCAGGAG 60 Query: 217 GATTTATCTGTTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAG 276 || | || | || | |||| | || || ||||| |||| | ||||||||| ||| Sbjct: 61 GACCTCTCCGCCGCCACCTCCAAGCTCGAGGAGAAGGAGAAGACCGNTCAAGAGGCTGAG 120 Query: 277 GCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAATTGGAACGAGCT 336 |||||||| || | |||| ||||| ||||| || || || || || | || |||| Sbjct: 121 GCTGAGGTCGCTTCTTTGAACCGTCGNATGACCCTCCTCGAGGAAGAGCTCGAGAGAGCC 180 Query: 337 GAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATACAGCTGATGAA 396 ||||| || ||||||| || || || || | ||||| || || || | | || || Sbjct: 181 GAGGAGNGTCTGAAGATCGCCACCGAGAAGCTCGAAGAGGCTACCCACAATGTCGACGAG 240 Query: 397 TCT 399 ||| Sbjct: 241 TCT 243 >gb|M79609|M79609 wEST00146 Caenorhabditis elegans cDNA clone CEMSB53 similar to Tropomyosin. Length = 251 Plus Strand HSPs: Score = 457 (126.3 bits), Expect = 1.3e-29, P = 1.3e-29 Identities = 129/178 (72%), Positives = 129/178 (72%), Strand = Plus / Plus Query: 247 GATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATG 306 || ||||| |||| ||||||||||| ||||||||||| || | |||| ||||| ||| Sbjct: 1 GAGAAGGAGAAGACCGTTCAAGAGGCTGAGGCTGAGGTCGCTTCTTTGAACCGTCGCATG 60 Query: 307 ACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAA 366 || || || || || || | || |||| ||||| ||| ||||||| || || || || Sbjct: 61 ACCCTCCTCGAGGAAGAGCTCGAGAGAGCCGAGGAGCGTCTGAAGATCGCCACCGAGAAG 120 Query: 367 TTGGAAGAAGCAACACATACAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | ||||| || || || | || || ||| | || || ||| |||||||||| | Sbjct: 121 CTCGAAGAGGCTACCCACAATNTCGACGAGTCTNAGCGCGTGCGCAAGGTTATGGAGA 178 >gb|M79610|M79610 wEST00147 Caenorhabditis elegans cDNA clone CEMSB53 similar to Tropomyosin. Length = 269 Plus Strand HSPs: Score = 428 (118.3 bits), Expect = 2.4e-26, P = 2.4e-26 Identities = 126/178 (70%), Positives = 126/178 (70%), Strand = Plus / Plus Query: 247 GATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATG 306 || ||||| |||| |||||| |||| ||||||||||| || | | || ||||| ||| Sbjct: 1 GAGAAGGAGAAGACCGTTCAAAAGGCTGAGGCTGAGGTCGCTTCTTTAAACCGTCGCATG 60 Query: 307 ACACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAA 366 || || || || || || | || |||| ||||| ||| | ||||| || || || || Sbjct: 61 ACCCTCCTCGAGGAAGAGCTCGAGAGAGCCGAGGAGCGTCTAAAGATCGCCACCGAGAAG 120 Query: 367 TTGGAAGAAGCAACACATACAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | ||||| || || || | || || ||| | || || ||| |||||||||| | Sbjct: 121 CTCGAAGAGGCTACCCACAATNTCGACGAGTCTAAGCGCGTGCGCAAGGTTATGGAGA 178 >dbj|D69675|CELK072F7F C.elegans cDNA clone yk72f7 : 5' end, single read. Length = 143 Plus Strand HSPs: Score = 398 (110.0 bits), Expect = 3.9e-25, P = 3.9e-25 Identities = 92/108 (85%), Positives = 92/108 (85%), Strand = Plus / Plus Query: 24 AACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGC 83 | |||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 36 ACCAAAAATGGACGCCATTAAGAAGAAGATGCAGGCCATGAAGATCGAGAAGGACAACGC 95 Query: 84 TCTCGATCGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGA 131 ||||||||| |||||||||| ||||| ||||| ||||| || || || Sbjct: 96 TCTCGATCGTGCCGATGCCGNTGAAGAGAAAGTCCGTCAGATCACCGA 143 >emb|F00822|HSB66G112 H. sapiens partial cDNA sequence; clone 66G11; version 1; strand(+), single read. Length = 342 Minus Strand HSPs: Score = 382 (105.6 bits), Expect = 5.0e-22, P = 5.0e-22 Identities = 164/276 (59%), Positives = 164/276 (59%), Strand = Minus / Plus Query: 424 TTTCCATAACCTNGCGAACACGTTCAGATTCATCAGCTGTATGTGTTGCTTCTTCCAATT 365 |||| ||||||| | | | |||| |||||||| | | | |||||| ||| | Sbjct: 16 TTTCAATAACCTTCATACCTCTTTCACTCTCATCAGCAGCTTTTNCAGCTTCTNCCAGCT 75 Query: 364 TATCCGTTGCAATCTTCAAACGTTCCTCAGCTCGTTCCAATTCCTCTTCCAGAAGTGTCA 305 | | | ||| | || || |||| ||| || |||| || ||||| | || | Sbjct: 76 TTTGCAGGGCAGTGGCCAGGCGCTCCTGAGCACGGTCCAGCTCTTCTTCAACCAGCTGGA 135 Query: 304 TACGACGATTCAGGGNTGCTACCTCAGCCTCCGCCTCTTGAACTTTCTTTTCCTTATCTT 245 | | ||| |||| || || ||||||||||| || || | | ||||| || || Sbjct: 136 TCCTACGGTTCAAGGAGGCCACCTCAGCCTCAGCATCAGCAGCCTTCTTCTCTGCCAGTT 195 Query: 244 CCAAGTTGGTATTTGCAACAGATAAATCTTCCTGTGCTTTATCTAAATCATTTTCAGTTN 185 ||| || | ||| | ||| |||| || || | |||| || || Sbjct: 196 CCAGCTTCTCCTGGGCATCCTTCAAAGCTTCAGAATACTTGTCCAGCTCATCCTCTGTCC 255 Query: 184 GCATCATCTTTTTCTGGGTATCACGTAGTTCTTCCT 149 ||| ||| ||||| | | || || |||| Sbjct: 256 CTTTCAGCTTCTTCTGCATGGCTGCCAGCTCATCCT 291 >gb|AA176790|AA176790 zp36d12.r1 Stratagene muscle 937209 Homo sapiens cDNA clone 611543 5' similar to gb:X04201 TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE (HUMAN); Length = 637 Plus Strand HSPs: Score = 365 (100.9 bits), Expect = 2.3e-20, P = 2.3e-20 Identities = 161/272 (59%), Positives = 161/272 (59%), Strand = Plus / Plus Query: 31 ATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGAT 90 ||||| || |||||||||||||||||| | |||| | || ||||| || ||||| ||| Sbjct: 50 ATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAGGAGAATGCTCTGGAT 109 Query: 91 CGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAG 150 || || || || |||| | || |||| ||| | ||| Sbjct: 110 CGGGCAGAGCAAGCTGAAGCTGAGCAGAAGCAGGCAGAAGAAAGAAGTAAACAGCTGGAG 169 Query: 151 GAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGATAAAGCA 210 || || || | | ||||| ||| ||| || || |||| | || || Sbjct: 170 GATGAGCTGGCAGCCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCTGGACAAGTAT 229 Query: 211 CAGGAAGATTTATCTGTTGCAAATACCAACTTGGAAGATAAGGAAAAGAAAGTTCAAGAG 270 |||| ||| | ||| | || ||||| || ||||| | | || Sbjct: 230 TCTGAAGCTTTGAAGGATGCCCAGGAGAAGCTGGAACTGGCAGAGAAGAAGGCTGCTGAT 289 Query: 271 GCGGAGGCTGAGGTAGCANCCCTGAATCGTCG 302 || ||||||||||| || || |||| ||| | Sbjct: 290 GCTGAGGCTGAGGTGGCCTCCTTGAACCGTAG 321 >gb|AA165802|AA165802 ms37e09.r1 Stratagene mouse heart (#937316) Mus musculus cDNA clone 613768 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); gb:X53753 Mouse mRNA for nonmuscle tropomyosin 5 (MOUSE); Length = 356 Plus Strand HSPs: Score = 304 (84.0 bits), Expect = 2.5e-15, P = 2.5e-15 Identities = 104/159 (65%), Positives = 104/159 (65%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | ||||| || Sbjct: 181 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGC 240 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| |||| || || | ||| | | || |||||||||| | | Sbjct: 241 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAG 300 Query: 386 CAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | |||||||| ||| | | | ||||||| |||| Sbjct: 301 CTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAA 339 >gb|AA305266|AA305266 EST176255 Colon carcinoma (Caco-2) cell line II Homo sapiens cDNA 5' end similar to oncogene trk, tropomyosin/protein tyrosine kinase fusion Length = 482 Plus Strand HSPs: Score = 304 (84.0 bits), Expect = 3.0e-15, P = 3.0e-15 Identities = 104/159 (65%), Positives = 104/159 (65%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | ||||| || Sbjct: 152 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGC 211 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| |||| || || | ||| | | || |||||||||| | | Sbjct: 212 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAG 271 Query: 386 CAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | |||||||| ||| | | | ||||||| |||| Sbjct: 272 CTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAA 310 >gb|AA075613|AA075613 zm70f12.r1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA clone 531023 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 496 Plus Strand HSPs: Score = 304 (84.0 bits), Expect = 3.1e-15, P = 3.1e-15 Identities = 104/159 (65%), Positives = 104/159 (65%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | ||||| || Sbjct: 186 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGC 245 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| |||| || || | ||| | | || |||||||||| | | Sbjct: 246 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAG 305 Query: 386 CAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | |||||||| ||| | | | ||||||| |||| Sbjct: 306 CTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAA 344 >gb|AA325648|AA325648 EST28666 Cerebellum II Homo sapiens cDNA 5' end similar to similar to tropomyosin TM30nm, cytoskeletal Length = 451 Plus Strand HSPs: Score = 297 (82.1 bits), Expect = 1.1e-14, P = 1.1e-14 Identities = 103/159 (64%), Positives = 103/159 (64%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | ||||| || Sbjct: 183 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGC 242 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| |||| || || | ||| | | || |||||||||| | | Sbjct: 243 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAG 302 Query: 386 CAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | |||||||| | | | | | ||||||| |||| Sbjct: 303 CTGCTGATGAGAGTNAGAGAGGTATGAAGGTTATTGAAA 341 >gb|AA312355|AA312355 EST183030 Jurkat T-cells VI Homo sapiens cDNA 5' end similar to similar to tropomyosin TM30nm, cytoskeletal Length = 434 Plus Strand HSPs: Score = 288 (79.6 bits), Expect = 6.5e-14, P = 6.5e-14 Identities = 102/159 (64%), Positives = 102/159 (64%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | | || | ||||| || Sbjct: 114 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGTTCCAGCTGGTTGAAGAAGAGC 173 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| |||| || || | ||| | | || |||||||||| | | Sbjct: 174 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAG 233 Query: 386 CAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | |||||||| | | | | | ||||||| |||| Sbjct: 234 CTGCTGATGAGAGTNAGAGAGGTATGAAGGTTATTGAAA 272 >gb|AA352514|AA352514 EST60515 Activated T-cells XX Homo sapiens cDNA 5' end similar to similar to tropomyosin TM30nm, cytoskeletal Length = 156 Plus Strand HSPs: Score = 268 (74.1 bits), Expect = 3.7e-13, P = 3.7e-13 Identities = 98/156 (62%), Positives = 98/156 (62%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | | || | ||||| || Sbjct: 1 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGANTCCAGCTGGTTGAAGAAGAGC 60 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| |||| || || | ||| | | || |||||||||| | | Sbjct: 61 TGGACCGTGCTCAGGAGCGNCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAG 120 Query: 386 CAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGG 421 | |||||||| | | | | ||||||| | Sbjct: 121 CTGCTGATGAGAGTTAGANAGGTATTAAGGTTATTG 156 >emb|F14809|SSC20D03 S.scrofa mRNA; expressed sequence tag (5'; clone c20d03) Length = 333 Plus Strand HSPs: Score = 259 (71.6 bits), Expect = 1.6e-11, P = 1.6e-11 Identities = 99/159 (62%), Positives = 99/159 (62%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | |||||||| Sbjct: 128 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGC 187 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| | || || | | ||| | | || |||| ||||| | Sbjct: 188 TGGACCGCGCTCAAGAGCGCCTTGCCACTGCCCTGCAAAAGCTGGAGGAAGCTGAGAAAG 247 Query: 386 CAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGGAAA 424 | |||||||| || | | | |||| || |||| Sbjct: 248 CTGCTGATGAGAGCGAGAGAGGTATGAAGGTCATTGAAA 286 >gb|T28648|T28648 EST50506 Homo sapiens cDNA 5' end similar to proto-oncogene trk (HT:1437). Length = 335 Plus Strand HSPs: Score = 251 (69.4 bits), Expect = 7.7e-11, P = 7.7e-11 Identities = 85/130 (65%), Positives = 85/130 (65%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | ||||| || Sbjct: 183 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGC 242 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGCAACACATA 385 |||| || ||| |||| | || | ||| | || |||||||||| | | Sbjct: 243 TGGACCGTGCTCAGGAGCNCCTGGCCACTGCCCTNCAAAAGCTGGAAGAAGCTGAAAAAG 302 Query: 386 CAGCTGATGA 395 | |||||||| Sbjct: 303 CTGCTGATGA 312 >gb|AA102247|AA102247 zn61f05.r1 Stratagene muscle 937209 Homo sapiens cDNA clone 562689 5' similar to gb:X04201 TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE (HUMAN); Length = 321 Plus Strand HSPs: Score = 249 (68.8 bits), Expect = 1.1e-10, P = 1.1e-10 Identities = 101/167 (60%), Positives = 101/167 (60%), Strand = Plus / Plus Query: 31 ATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGAT 90 ||||| || |||||||||||||||||| | |||| | || ||||| || ||| | ||| Sbjct: 60 ATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAGGAGAATGCTNTGGAT 119 Query: 91 CGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAG 150 || || ||| || |||| | || |||| ||| | ||| Sbjct: 120 CGGGCAGATNAAGCTGAAGCTGAGCAGAANCAGGCAGAAGAAAGAAGTAAACAGCTGGAG 179 Query: 151 GAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGA 197 || || || | | ||||| ||| ||| || || |||| Sbjct: 180 GATGAGCTGGCAGCCATGCAGAAGAAGCTGAAAGGGACAGAGGATGA 226 >gb|AA086143|AA086143 zl84g06.r1 Stratagene colon (#937204) Homo sapiens cDNA clone 511354 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 527 Plus Strand HSPs: Score = 238 (65.8 bits), Expect = 1.2e-09, P = 1.2e-09 Identities = 76/112 (67%), Positives = 76/112 (67%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | ||||| || Sbjct: 188 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGC 247 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGC 377 |||| || ||| |||| || || | ||| | | || |||||||||| Sbjct: 248 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGC 299 >gb|AA263523|AA263523 LD06602.5prime LD Drosophila Embryo Drosophila melanogaster cDNA clone LD06602 5' Length = 557 Plus Strand HSPs: Score = 237 (65.5 bits), Expect = 1.5e-09, P = 1.5e-09 Identities = 73/105 (69%), Positives = 73/105 (69%), Strand = Plus / Plus Query: 11 AACAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCG 70 || || || | | | | | ||||| || |||||||| |||||||| |||||||| | | Sbjct: 43 AAAAACAAGAACACAAACACATGGACGCCATCAAGAAGAAGATGCAAGCGATGAAGCTTG 102 Query: 71 AGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAG 115 ||||||||||||| | || ||||| || || | ||| Sbjct: 103 AGAAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAAG 147 >gb|AA567134|AA567134 GM01177.5prime GM Drosophila Ovary Drosophila melanogaster cDNA clone GM01177 5' similar to K03277: D. melanogaster tropomyosin I gene, exons 2-5, complete cds Length = 286 Plus Strand HSPs: Score = 231 (63.8 bits), Expect = 3.5e-09, P = 3.5e-09 Identities = 75/111 (67%), Positives = 75/111 (67%), Strand = Plus / Plus Query: 5 AATTGAAACAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGA 64 || | ||| | ||| || | ||||| || |||||||| |||||||| ||||||| Sbjct: 66 AAGTCAAAAACAAAAACACAAACACCATGGACGCCATCAAGAAGAAGATGCAAGCGATGA 125 Query: 65 AAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAG 115 | | |||||||||||||| | || ||||| || || | ||| Sbjct: 126 AGCTTGAGAAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAAG 176 >gb|AA567410|AA567410 HL01145.5prime HL Drosophila Head Drosophila melanogaster cDNA clone HL01145 5' similar to K02622: D.melanogaster gene for tropomyosin isoforms 127 and 129, exons 1 and 2; K03277: D. melanogaster tropomyosin I gene, exon... Length = 609 Plus Strand HSPs: Score = 231 (63.8 bits), Expect = 4.9e-09, P = 4.9e-09 Identities = 75/111 (67%), Positives = 75/111 (67%), Strand = Plus / Plus Query: 5 AATTGAAACAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGA 64 || | ||| | ||| || | ||||| || |||||||| |||||||| ||||||| Sbjct: 33 AAGTCAAAAACAAAAACACAAACACCATGGACGCCATCAAGAAGAAGATGCAAGCGATGA 92 Query: 65 AAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAG 115 | | |||||||||||||| | || ||||| || || | ||| Sbjct: 93 AGCTTGAGAAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAAG 143 >gb|AA264157|AA264157 LD07793.5prime LD Drosophila Embryo Drosophila melanogaster cDNA clone LD07793 5' Length = 707 Plus Strand HSPs: Score = 231 (63.8 bits), Expect = 5.1e-09, P = 5.1e-09 Identities = 75/111 (67%), Positives = 75/111 (67%), Strand = Plus / Plus Query: 5 AATTGAAACAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAAGATGCAGGCGATGA 64 || | ||| | ||| || | ||||| || |||||||| |||||||| ||||||| Sbjct: 56 AAGTCAAAAACAAAAACACAAACACCATGGACGCCATCAAGAAGAAGATGCAAGCGATGA 115 Query: 65 AAATCGAGAAGGATAACGCTCTCGATCGAGCCGATGCCGCGGAAGAAAAAG 115 | | |||||||||||||| | || ||||| || || | ||| Sbjct: 116 AGCTTGAGAAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAAG 166 >emb|F00797|HSB63F082 H. sapiens partial cDNA sequence; clone 63F08; version 1; strand(+), single read. Length = 335 Plus Strand HSPs: Score = 225 (62.2 bits), Expect = 1.3e-08, P = 1.3e-08 Identities = 109/191 (57%), Positives = 109/191 (57%), Strand = Plus / Plus Query: 31 ATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGAT 90 ||||| || |||||||||||||||||| | |||| | || |||| || ||||| | | Sbjct: 72 ATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAGGNGAATGCTCTGGTT 131 Query: 91 CGAGCCGATGCCGCGGAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAG 150 || || || || |||| | || |||| ||| | ||| Sbjct: 132 CGGGCAGAGCAAGCTGAAGCTGAGCAGAAGCAGGCAGAAGAAAGAAGTAAACAGCTGGAG 191 Query: 151 GAAGAACTACGTGATACCCAGAAAAAGATGATGCNAACTGAAAATGATTTAGATAAAGCA 210 || || || | | ||||| | | ||| | || |||| | || || Sbjct: 192 GATGAGCTGGCAGCCATGCAGAAGANGCTGAAAGGGNCAGAGGATGAGCTGGACAAGTAT 251 Query: 211 CAGGAAGATTT 221 |||| ||| Sbjct: 252 TCTGAAGCTTT 262 >gb|AA082548|AA082548 ze89a09.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 366136 5' similar to gb:M19713 TROPOMYOSIN ALPHA CHAIN, CARDIAC MUSCLE (HUMAN); Length = 196 Plus Strand HSPs: Score = 219 (60.5 bits), Expect = 2.5e-08, P = 2.5e-08 Identities = 59/79 (74%), Positives = 59/79 (74%), Strand = Plus / Plus Query: 31 ATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGAT 90 ||||| || |||||||| ||||||| | | |||| |||| ||||| ||||| | ||| Sbjct: 52 ATGGACGCCATCAAGAANAAGATGCNGATGCTGAAGCTCGACAAGGAGAACGCCTTGGAT 111 Query: 91 CGAGCCGATGCCGCGGAAG 109 ||||| || ||||| | Sbjct: 112 CGAGCTGAGCAGGCGGAGG 130 >gb|AA180507|AA180507 zp53e10.r1 Stratagene NT2 neuronal precursor 937230 Homo sapiens cDNA clone 613194 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 483 Plus Strand HSPs: Score = 220 (60.8 bits), Expect = 3.9e-08, P = 3.9e-08 Identities = 74/112 (66%), Positives = 74/112 (66%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | | | | ||||| || Sbjct: 152 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGATCCAGCGTGGTTGAAGAAGAGC 211 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGAAGC 377 |||| || ||| |||| || || | ||| | | || |||||||||| Sbjct: 212 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGC 263 >gb|N28063|N28063 EST000017 Schistosoma mansoni cDNA clone SMTBADAMS0017SK 5' end similar to S. mansoni tropomyosin mRNA. Length = 402 Plus Strand HSPs: Score = 196 (54.2 bits), Expect = 4.0e-06, P = 4.0e-06 Identities = 70/113 (61%), Positives = 70/113 (61%), Strand = Plus / Plus Query: 309 ACTTCTGGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATT 368 || || |||| ||||||||| ||||| ||| | | || || | ||| | Sbjct: 108 ACAGCTTGAAGNTGAATTGGAATCTACTGAGACTCGTCTTCAAGANGCTACNGTTAAGCT 167 Query: 369 GGAAGAAGCAACACATACAGCTGATGAATCTGAACGTGTTCGCNAGGTTATGG 421 ||||| |||| | | ||||||||| ||| || | ||| | | ||| Sbjct: 168 TGAAGANGCAANTAAANCTGCTGATGAACGTGATCGNGGTCGTAAAGNATTGG 220 >gb|AA070556|AA070556 zm70d06.r1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA clone 530987 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 486 Plus Strand HSPs: Score = 194 (53.6 bits), Expect = 6.2e-06, P = 6.2e-06 Identities = 66/101 (65%), Positives = 66/101 (65%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| || || | ||||| || Sbjct: 182 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTANGATCCAGCTGGTTGAAGAAGAGC 241 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAA 366 |||| || ||| |||| || || | ||| | | ||| Sbjct: 242 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCCTGCAAAA 282 >gb|AA071217|AA071217 zm73b02.r1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA clone 531243 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 469 Plus Strand HSPs: Score = 189 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05 Identities = 61/91 (67%), Positives = 61/91 (67%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | | || | ||||| || Sbjct: 182 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGANTCCAGCTGGTTGAAGAAGAGC 241 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGC 356 |||| || ||| |||| || || | ||| Sbjct: 242 TGGACCGTGCTCAGGAGCGCCTGGCCACTGC 272 >gb|AA371300|AA371300 EST83071 Prostate gland I Homo sapiens cDNA 5' end similar to similar to oncogene trk, tropomyosin/protein tyrosine kinase fusion Length = 297 Plus Strand HSPs: Score = 187 (51.7 bits), Expect = 2.0e-05, P = 2.0e-05 Identities = 65/101 (64%), Positives = 65/101 (64%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| | || | || ||| | || || | ||||| || Sbjct: 183 AACAGGCTGAGGCTGAGGTGGNCTCCTTNAACCGTAGGATCCAGCTGGTTGAAGAAGAGC 242 Query: 326 TGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAA 366 |||| || ||| |||| || || | ||| | | ||| Sbjct: 243 TGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAA 283 >gb|AA084227|AA084227 zn03c11.r1 Stratagene hNT neuron (#937233) Homo sapiens cDNA clone 546356 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 306 Plus Strand HSPs: Score = 185 (51.1 bits), Expect = 3.0e-05, P = 3.0e-05 Identities = 55/78 (70%), Positives = 55/78 (70%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | | | | | ||||| || Sbjct: 182 AACAGGCTGAGGCTGAGGTGGCTTCCTTGAACCGTAGATTCAACTTGGTTGAAGAAGAGC 241 Query: 326 TGGAACGAGCTGAGGAAC 343 |||| || ||| |||||| Sbjct: 242 TGGACCGTGCTCAGGAAC 259 >gb|AA172281|AA172281 zp29d08.r1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA clone 610863 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 416 Plus Strand HSPs: Score = 183 (50.6 bits), Expect = 5.1e-05, P = 5.1e-05 Identities = 55/79 (69%), Positives = 55/79 (69%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| || || | ||||| || Sbjct: 207 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTANGATCCAGCTGGTTGAAGAAGAGC 266 Query: 326 TGGAACGAGCTGAGGAACG 344 |||| || ||| |||| || Sbjct: 267 TGGACCGTGCTCAGGAGCG 285 >gb|AA196229|AA196229 zp98d01.r1 Stratagene muscle 937209 Homo sapiens cDNA clone 628225 5' similar to gb:X04201 TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE (HUMAN); Length = 292 Plus Strand HSPs: Score = 174 (48.1 bits), Expect = 0.00026, P = 0.00026 Identities = 54/79 (68%), Positives = 54/79 (68%), Strand = Plus / Plus Query: 31 ATGGATGCGATCAAGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGAT 90 ||||| | |||||||||||||| | |||| | || ||||| || | ||| ||| Sbjct: 60 ATGGAGGGCCATNAGAAAAAGATGCAGATGCTGAAGTTAGACAAGGAGAATGNTCTGGAT 119 Query: 91 CGAGCCGATGCCGCGGAAG 109 || || || || |||| Sbjct: 120 CGGGCAGAGCAAGCTGAAG 138 >gb|AA192706|AA192706 zp93d11.r1 Stratagene muscle 937209 Homo sapiens cDNA clone 627765 5' similar to gb:X04201 TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE (HUMAN); Length = 418 Plus Strand HSPs: Score = 167 (46.1 bits), Expect = 0.0011, P = 0.0011 Identities = 43/55 (78%), Positives = 43/55 (78%), Strand = Plus / Plus Query: 44 AGAAAAAGATGCAGGCGATGAAAATCGAGAAGGATAACGCTCTCGATCGAGCCGA 98 |||||||||||||| | |||| | || ||||| || ||||| ||||| || || Sbjct: 1 AGAAAAAGATGCAGATGCTGAAGTTAGACAAGGAGAATGCTCTGGATCGGGCAGA 55 >gb|AA381774|AA381774 EST94892 Activated T-cells I Homo sapiens cDNA 5' end similar to similar to oncogene trk, tropomyosin/protein tyrosine kinase fusion Length = 277 Plus Strand HSPs: Score = 145 (40.1 bits), Expect = 0.073, P = 0.071 Identities = 45/66 (68%), Positives = 45/66 (68%), Strand = Plus / Plus Query: 266 AAGAGGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAAT 325 || |||| ||||||||||| || || |||| ||| | || || | ||||| || Sbjct: 174 AACAGGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTNGTTGAAGAAGAGC 233 Query: 326 TGGAAC 331 | | || Sbjct: 234 TTGGAC 239 >gb|AA126166|AA126166 zm78c01.r1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA clone 531744 5' similar to gb:X04588_cds1 TROPOMYOSIN, CYTOSKELETAL TYPE (HUMAN); Length = 429 Plus Strand HSPs: Score = 143 (39.5 bits), Expect = 0.12, P = 0.12 Identities = 50/75 (66%), Positives = 50/75 (66%), Strand = Plus / Plus Query: 270 GGCGGAGGCTGAGGTAGCANCCCTGAATCGTCGTATGACACTTCTGGAAGAGGAATTGGA 329 | | ||||||||||| || ||| |||| | || || | ||||| || |||| Sbjct: 164 GCCTGAGGCTGAGGTGGCCNCCTTGAACCCGTAGATCCAGCTGGTTGAAGAAGAGCTGGA 223 Query: 330 ACGAGCTGAGGAACG 344 || ||| |||| || Sbjct: 224 CCGTGCTCAGGAGCG 238 >gb|W26243|W26243 26g6 Human retina cDNA randomly primed sublibrary Homo sapiens cDNA. Length = 639 Plus Strand HSPs: Score = 133 (36.8 bits), Expect = 0.92, P = 0.60 Identities = 53/86 (61%), Positives = 53/86 (61%), Strand = Plus / Plus Query: 315 GGAAGAGGAATTGGAACGAGCTGAGGAACGTTTGAAGATTGCAACGGATAAATTGGAAGA 374 || ||||||| | || | ||||| || | || ||| || | ||| || Sbjct: 134 GGGAGAGGAACTACAAGGGACTGAGAAAGGAGTGGGAGTTGAGGGGGGCATCTTGAGTGA 193 Query: 375 AGCAACACATACAGCTGATGAATCTG 400 || | | ||| |||||||||||| Sbjct: 194 AGTGAAAGATATCACTGATGAATCTG 219 >gb|AA192109|AA192109 zq02a04.r1 Stratagene muscle 937209 Homo sapiens cDNA clone 628494 5' similar to gb:X04201 TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE (HUMAN); Length = 398 Plus Strand HSPs: Score = 129 (35.6 bits), Expect = 1.8, P = 0.84 Identities = 43/65 (66%), Positives = 43/65 (66%), Strand = Plus / Plus Query: 238 AACTTGGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAGCANCCCTGAAT 297 || ||||| || ||||| | | || || ||||||||||| || || |||| Sbjct: 15 AAGCTGGAACTGGCAGAGAAGAAGGCTGCTGATGCTGAGGCTGAGGTGGCCTCCTTGAAC 74 Query: 298 CGTCG 302 ||| | Sbjct: 75 CGTAG 79 >emb|Z18442|ATTS0817 A. thaliana transcribed sequence; clone GBGy10, 3' end. Length = 186 Plus Strand HSPs: Score = 125 (34.5 bits), Expect = 3.1, P = 0.95 Identities = 33/43 (76%), Positives = 33/43 (76%), Strand = Plus / Plus Query: 8 TGAAACAATAAACAGAAACAAAAATGGATGCGATCAAGAAAAA 50 ||| | ||||||||||||||||||| | | || ||| || | Sbjct: 64 TGAGATAATAAACAGAAACAAAAATCCAAGAGAAGAAGTAATA 106 >gb|AA294458|AA294458 SWOv3MCA659SK Onchocerca volvulus molting L3 cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWmL3CO659 5' Length = 367 Plus Strand HSPs: Score = 124 (34.3 bits), Expect = 4.8, P = 0.99 Identities = 28/32 (87%), Positives = 28/32 (87%), Strand = Plus / Plus Query: 314 TGGAAGAGGAATTGGAACGAGCTGAGGAACGT 345 | |||| ||| |||||||||||||| |||||| Sbjct: 168 TTGAAGCGGATTTGGAACGAGCTGAAGAACGT 199 >gb|AA604449|AA604449 np57g11.r1 NCI_CGAP_Br2 Homo sapiens cDNA clone IMAGE:1130468 Length = 332 Plus Strand HSPs: Score = 123 (34.0 bits), Expect = 5.7, P = 1.0 Identities = 31/39 (79%), Positives = 31/39 (79%), Strand = Plus / Plus Query: 189 TGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTGT 227 ||||| |||||||||||||| | || |||| || ||| Sbjct: 207 TGAAATTGATTTAGATAAAGAAAAGAGAGATGCATTTGT 245 >gb|AA226865|AA226865 zr20f01.r1 Stratagene NT2 neuronal precursor 937230 Homo sapiens cDNA clone 663961 5' Length = 396 Plus Strand HSPs: Score = 123 (34.0 bits), Expect = 5.9, P = 1.0 Identities = 31/39 (79%), Positives = 31/39 (79%), Strand = Plus / Plus Query: 189 TGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTGT 227 ||||| |||||||||||||| | || |||| || ||| Sbjct: 302 TGAAATTGATTTAGATAAAGAAAAGAGAGATGCATTTGT 340 >gb|AA587067|AA587067 nn77g03.s1 NCI_CGAP_Co9 Homo sapiens cDNA clone IMAGE:1089940 Length = 483 Plus Strand HSPs: Score = 123 (34.0 bits), Expect = 6.1, P = 1.0 Identities = 31/39 (79%), Positives = 31/39 (79%), Strand = Plus / Plus Query: 189 TGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTGT 227 ||||| |||||||||||||| | || |||| || ||| Sbjct: 291 TGAAATTGATTTAGATAAAGAAAAGAGAGATGCATTTGT 329 >gb|AA057428|AA057428 zf57c11.s1 Soares retina N2b4HR Homo sapiens cDNA clone 381044 3' Length = 693 Plus Strand HSPs: Score = 123 (34.0 bits), Expect = 6.4, P = 1.0 Identities = 31/39 (79%), Positives = 31/39 (79%), Strand = Plus / Plus Query: 189 TGAAAATGATTTAGATAAAGCACAGGAAGATTTATCTGT 227 ||||| |||||||||||||| | || |||| || ||| Sbjct: 291 TGAAATTGATTTAGATAAAGAAAAGAGAGATGCATTTGT 329 >gb|AA105524|AA105524 mo57d07.r1 Life Tech mouse embryo 8 5dpc 10664019 Mus musculus cDNA clone 557677 5' Length = 321 Plus Strand HSPs: Score = 122 (33.7 bits), Expect = 6.9, P = 1.0 Identities = 42/64 (65%), Positives = 42/64 (65%), Strand = Plus / Plus Query: 106 GAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGAT 165 || ||||| || || | |||| ||||| | || |||||||||||||| || Sbjct: 213 GATGAAAAGCAACAGGAAGCAAATGAAACGTTGGCAGAGATGGAGGAAGAACTACGATAT 272 Query: 166 ACCC 169 | | Sbjct: 273 GCAC 276 >gb|W53760|W53760 md15e09.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 368488 5'. Length = 374 Plus Strand HSPs: Score = 122 (33.7 bits), Expect = 7.1, P = 1.0 Identities = 42/64 (65%), Positives = 42/64 (65%), Strand = Plus / Plus Query: 106 GAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGAT 165 || ||||| || || | |||| ||||| | || |||||||||||||| || Sbjct: 241 GATGAAAAGCAACAGGAAGCAAATGAAACGTTGGCAGAGATGGAGGAAGAACTACGATAT 300 Query: 166 ACCC 169 | | Sbjct: 301 GCAC 304 >gb|AA013839|AA013839 mh24d07.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 443437 5' Length = 379 Plus Strand HSPs: Score = 122 (33.7 bits), Expect = 7.1, P = 1.0 Identities = 42/64 (65%), Positives = 42/64 (65%), Strand = Plus / Plus Query: 106 GAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGAT 165 || ||||| || || | |||| ||||| | || |||||||||||||| || Sbjct: 268 GATGAAAAGCAACAGGAAGCAAATGAAACGTTGGCAGAGATGGAGGAAGAACTACGATAT 327 Query: 166 ACCC 169 | | Sbjct: 328 GCAC 331 >gb|W84286|W84286 mf45f07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 408037 5' Length = 421 Plus Strand HSPs: Score = 122 (33.7 bits), Expect = 7.3, P = 1.0 Identities = 42/64 (65%), Positives = 42/64 (65%), Strand = Plus / Plus Query: 106 GAAGAAAAAGTACGTCAAATGACGGAAAAGTTGGAACGAATCGAGGAAGAACTACGTGAT 165 || ||||| || || | |||| ||||| | || |||||||||||||| || Sbjct: 240 GATGAAAAGCAACAGGAAGCAAATGAAACGTTGGCAGAGATGGAGGAAGAACTACGATAT 299 Query: 166 ACCC 169 | | Sbjct: 300 GCAC 303 >gb|AA230479|AA230479 mv73f07.r1 Soares mouse 3NME12 5 Mus musculus cDNA clone 660709 5' similar to gb:X59543_rna1 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN (HUMAN); gb:K02927 Mouse ribonucleotide reductase subunit M1 mRNA, complete (MOUSE); Length = 627 Plus Strand HSPs: Score = 122 (33.7 bits), Expect = 7.7, P = 1.0 Identities = 34/46 (73%), Positives = 34/46 (73%), Strand = Plus / Plus Query: 238 AACTTGGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGG 283 || || |||||||||||||| | | | |||||||||| ||| Sbjct: 75 AAACTGAAAGATAAGGAAAAGGCACTGAAGGAGGCGGAGGAGAAGG 120 >gb|AA231966|AA231966 SWMFCA1361SK Brugia malayi microfilaria cDNA (SAW94LS-BmMF) Brugia malayi cDNA clone SWMFCA1361 5' Length = 269 Plus Strand HSPs: Score = 121 (33.4 bits), Expect = 7.9, P = 1.0 Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Plus / Plus Query: 243 GGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAG 286 | || | |||||||||||| |||||| |||| |||| | || Sbjct: 135 GAAAAAGGAGGAAAAGAAAGAGAAAGAGGAGGAGTCTGATGAAG 178 >gb|AA433396|AA433396 SWAMCA1612SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCA1612 5' Length = 431 Plus Strand HSPs: Score = 121 (33.4 bits), Expect = 8.9, P = 1.0 Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Plus / Plus Query: 243 GGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAG 286 | || | |||||||||||| |||||| |||| |||| | || Sbjct: 299 GAAAAAGGAGGAAAAGAAAGAGAAAGAGGAGGAGTCTGATGAAG 342 >gb|R78210|R78210 yi77b12.r1 Homo sapiens cDNA clone 145247 5'. Length = 439 Minus Strand HSPs: Score = 121 (33.4 bits), Expect = 8.9, P = 1.0 Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Minus / Plus Query: 54 CATCTTTTTCTTGATCGCATCCATTTTTGTTTCTGTTTATTGTT 11 | |||||||||||||| | | || | ||||| ||| ||||| Sbjct: 156 CCTCTTTTTCTTGATCTTTTTCCTTCTCTTTTCTTTTTCTTGTT 199 >gb|AA508939|AA508939 MBAFCW1D09T3 Brugia malayi adult female cDNA (SAW96MLW-BmAF) Brugia malayi cDNA clone AFCW1D09 5' Length = 458 Plus Strand HSPs: Score = 121 (33.4 bits), Expect = 9.0, P = 1.0 Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Plus / Plus Query: 243 GGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAG 286 | || | |||||||||||| |||||| |||| |||| | || Sbjct: 315 GAAAAAGGAGGAAAAGAAAGAGAAAGAGGAGGAGTCTGATGAAG 358 >gb|W51515|W51515 AS4SLC946T3 Brugia malayi L4 JHU93SL-BmL4 Brugia malayi cDNA clone AS4SLC946 5' end. Length = 474 Plus Strand HSPs: Score = 121 (33.4 bits), Expect = 9.0, P = 1.0 Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Plus / Plus Query: 243 GGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAG 286 | || | |||||||||||| |||||| |||| |||| | || Sbjct: 321 GAAAAAGGAGGAAAAGAAAGAGAAAGAGGAGGAGTCTGATGAAG 364 >gb|W51568|W51568 AS4SLC749T3 Brugia malayi L4 JHU93SL-BmL4 Brugia malayi cDNA clone AS4SLC749 5' end. Length = 478 Plus Strand HSPs: Score = 121 (33.4 bits), Expect = 9.1, P = 1.0 Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Plus / Plus Query: 243 GGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAG 286 | || | |||||||||||| |||||| |||| |||| | || Sbjct: 321 GAAAAAGGAGGAAAAGAAAGAGAAAGAGGAGGAGTCTGATGAAG 364 >gb|N43412|N43412 AS4SLC534T3 Brugia malayi cDNA clone AS4SLC534 5' end. Length = 482 Plus Strand HSPs: Score = 121 (33.4 bits), Expect = 9.1, P = 1.0 Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Plus / Plus Query: 243 GGAAGATAAGGAAAAGAAAGTTCAAGAGGCGGAGGCTGAGGTAG 286 | || | |||||||||||| |||||| |||| |||| | || Sbjct: 325 GAAAAAGGAGGAAAAGAAAGAGAAAGAGGAGGAGTCTGATGAAG 368 >gb|AA540562|AA540562 LD20282.5prime LD Drosophila Embryo Drosophila melanogaster cDNA clone LD20282 5' Length = 695 Minus Strand HSPs: Score = 121 (33.4 bits), Expect = 9.5, P = 1.0 Identities = 41/62 (66%), Positives = 41/62 (66%), Strand = Minus / Plus Query: 71 TCGATTTTCATCGCCTGCATCTTTTTCTTGATCGCATCCATTTTTGTTTCTGTTTATTGT 12 | |||||||||||| |||| | || | ||| | ||||||| | |||| | | Sbjct: 17 TTGATTTTCATCGCGTGCAGTCTGTTTTCCCAAGCAGCTTTTTTTGTATTAGTTTTTAAT 76 Query: 11 TT 10 || Sbjct: 77 TT 78 >dbj|C35064|C35064 C.elegans cDNA clone yk423b5 : 3' end, single read Length = 300 Minus Strand HSPs: Score = 120 (33.2 bits), Expect = 10., P = 1.0 Identities = 32/42 (76%), Positives = 32/42 (76%), Strand = Minus / Plus Query: 283 CCTCAGCCTCCGCCTCTTGAACTTTCTTTTCCTTATCTTCCA 242 | || || ||||||||||||| |||| ||||| | |||| Sbjct: 56 CTTCTGCTTCCGCCTCTTGAAGAATCTTGTCCTTGTAGTCCA 97 Parameters: V=50 P=4 B=250 -ctxfactor=2.00 E=10 Query ----- As Used ----- ----- Computed ---- Strand MatID Matrix name Lambda K H Lambda K H +1 0 +5,-4 0.192 0.173 0.357 same same same -1 0 +5,-4 0.192 0.173 0.357 same same same Query Strand MatID Length Eff.Length E S W T X E2 S2 +1 0 424 421 10. 118 11 N/A 73 0.025 77 -1 0 424 421 10. 118 11 N/A 73 0.025 77 Statistics: Query Expected Observed HSPs HSPs Strand MatID High Score High Score Reportable Reported +1 0 125 (34.5 bits) 2069 (571.7 bits) 71 71 -1 0 125 (34.5 bits) 841 (232.4 bits) 5 5 Query Neighborhd Word Excluded Failed Successful Overlaps Strand MatID Words Hits Hits Extensions Extensions Excluded +1 0 393 82598 7323 72305 2970 2 -1 0 393 80516 6367 71716 2433 1 Database: Non-redundant Database of GenBank EST Division Release date: December 5, 1997 Posted date: 6:30 AM EST Dec 5, 1997 # of letters in database: 492,793,146 # of sequences in database: 1,334,370 # of database sequences satisfying E: 71 No. of states in DFA: 211 (211 KB) Total size of DFA: 221 KB (256 KB) Time to generate neighborhood: 0.00u 0.00s 0.00t Real: 00:00:00 No. of processors used: 4 Time to search database: 17.07u 0.56s 17.63t Real: 00:00:05 Total cpu time: 17.10u 0.60s 17.70t Real: 00:00:06