Refined Agent Model Using Shape-Based Grained
Structure: Application to Membrane Molecules
Francois Vallee, Marie Beurton-Aimar, Hien T. Tran and
Nicolas Parisey
in Journal of
Computer and Communications
04(13):12-22. January 2016
Estimating landmarks on 2D images of beetle
mandibles
Le Van, L., Beurton-Aimar, M., Salmon, J.P., Marie,A.,
Parisey,N.
24th WSCG Conference on Computer Graphics,
Visualization and Computer Vision
30 may- 3 june 2016, Pilsen (Czech
Republic).
Metabolic Networks: Visual Analysis of Elementary Flux Modes
Marie Beurton-Aimar, Joris Sansen, Tung Ngoc Vu Nguyen
BioNetVisA 2016 workshop (joined to ECCB). The Hague (Netherlands), 4
september 2016
Metabolic Network Reconstruction and Their Topological Analysis
Marie Beurton-Aimar, Tung Vu-Ngoc Nguyen, Sophie Colombie
Book chapter in Plant Metabolic Flux Analysis, in Methods in molecular biology
1090:19-38. October 2014
Fast Computation of Minimal Cut Sets in Metabolic Networks with a
Berge Algorithm that Utilizes Binary Bit Pattern Trees
]C. Jungreuthmayer, M. Beurton-Aimar, J. Zanghellini
IEEE/ACM Trans Comput Biol Bioinform
2013 Sep-Oct;10(5):1329-33.
ACoM: a classification method for elementary flux modes based on motif finding
Peres, S. and Vallée, F. and Beurton-Aimar, M. and Mazat, J.P.
Biosystems,
vol 103(3), p410-
419,2011.
Image processing for MRI brain images with social spiders
Richard moussa, Marie Beurton-Aimar and Pascal Desbarats.
Multi-agent Systems - Modeling, Control, Programming,
Simulations and Applications.,
Chapter 18-pp. 363-382 ,Edited by: Faisal Alkhateeb, Eslam Al Maghayreh and Iyad
Abu Doush Publisher: InTech, April 2011, ISBN 978-953-307-174-9
Towards Noise Robust Edge Detection Using Ants Colonies In 3D Medical MR Images.
Richard Moussa, Pascal Desbarats and Marie Beurton-Aimar
EEE Congress
on Evolutionary Computation (IEEE CEC 2011)
- june 5-8 2011 New Orleans, USA.
Elementary Flux Mode Analysis of the Central Metabolism of Plant Cells
F. Vallee, S. Colombie, B. Beauvoit, N. Parisey, M. Dieuaide-Noubhani, M. Beurton-Aimar
Seventh International Workshop on Com-
putational Systems Biology, WCSB 2010
June 16-18, 2010, Luxembourg.
On the use of social agents for image segmentation -
Moussa R., Beurton-Aimar M., Desbarats P.
International Conference on complex systems and applications
(iccsa 2009) - (2009)
Multi-agent segmentation for 3D medical images,
Moussa R., Beurton-Aimar M., Desbarats P
Proceedings of the 9th International Conference on Information
Technology and Applications in Biomedicine, ITAB 2009,
Larnaca, cyprus, 5-7 November 2009.
Multi-Agent Model for Simulation at the Subcellular Level
Beurton-Aimar M., Parisey N., Vallee F.
ECAL 2009 - Darwin Meets von Neumann
(2009)
TIM/WIM: a set of tools to interface modelling in biology
Francois Vallee, Marie Beurton-Aimar, Nicolas Parisey, Florent Collot, Sophie Colombie
Proceedings of the 6th European Lisp Workshop in con-
junction with ECOOP ’09 European Conference on Object-Oriented Programming genova
Italy. July 06 - 10, 2009.
Investigating Oxidoreduction Kinetics using Protein Dynamics. - Journal of Biological Physics and Chemistry
Parisey N., Beurton-Aimar M.
JBPC Journal of Biological Physics and Chemistry 9 (2008) , 27-35.
Formal TCA cycle description based on elementary actions
Pierre Maziere, Nicolas Parisey, Marie Beurton-Aimar and Franck Molina
Journal of BioSciences
Vol 32, 1- feb. 2007, 145-155
Classification des modes élémentaires : application au métabolisme énergétique mitochondrial
S. Peres, M. Beurton-Aimar, JP Mazat
Technique et Science Informatiques,
ol 26 numéro 1-2 pp 197-
216,2007.
Les reseaux biochimiques,
M. Beurton-Aimar
Standard pour la biologie systémique
Chapitre 7- p167-182 ed.Ecrin 2007. ISBN 978-2-
916097-12-1
Mitochondrial OxydoReduction Simulation using Multi-Agent
System
N. Parisey and J.P. Mazat, and M. Beurton-Aimar
European Simulation and Modelling Conference,ESM’2007
October 22-24, 2007- Malta. ISBN 978-90-
77381-36-6 p385 - 390
An agent-based framework to simulate metabolic processes
Marie Beurton-Aimar, Nicolas Parisey
ELW at European Conference on Object-Oriented Pro-
gramming,
20th edition July 3-7, Nantes (France) 2006.
Modelling of biological complex systems in the context of genomics
Thierry A. R., Képès F., Amar P., Barlovatz-Meimon G., Bernot G., Beurton-Aimar M., Dutreix M., Giavitto J.-L.,
Guespin J., Mazat J.-P. et al.
An account of a multidisciplinary thematic
seminar held in Montpellier (France) in April 2005, Journal of Biological Physics and Chemistry
6 (2006) 103–107
Multi-Agent Design to Reduce Complexity of Biological Processes,
Parisey N., Beurton-Aimar M., Lales C.
7th German Workshop on Artificial Life,
Allemagne (2006)
Simulation of mitochondrial metabolism using multi-agents system
C. Lales ,N. Parisey, J.P. Mazat, M. Beurton-Aimar
Int. Workshop on Multiagent Systems for Bioin-
formatics and Medicine, Conference on Autonomaus Agents and Multi-Agents Systems - AAMAS
Utrecht, July 2005
Analysis of large set of elementary modes : application to energetic mitochondrial metabolism
Peres, S. Beurton-Aimar M. and Mazat, J.P.
European Conference
on Complex Systems
Paris, novembre 2005
A hyperstructure approach to mitochondria
Mirella Trinei, Jean-Pierre Vannier, Marie Beurton-Aimar, Vic Norris.
Molecular biology
vol 53 (1) p 41-53, 2004
Towards computer-aided diagnosis for white matter abnormalities
Laurent Vallet, Marie Beurton-Aimar Pascal Desbarats, Colette Fabrigoule, Michèle Allard
International Conference on Computer Vision and GraphicsSeptember 22-24, 2004
Warsaw, Poland.
Virtual Mitochondria : Metabolic Modelling And Control
Marie Aimar, Stéphane Ludinard, Bernard Korzeniewski, Jean-Pierre Mazat and Christine Nazaret.
International Journal on Molecular and Cellular Biology(Kluwer
Academic Publishers), vol 29:1-2, p227-232, 2002.
Virtual mitochondria and their control
Marie Aimar, Bernard Korzeniewski, Jean-Pierre Mazat and Christine Nazaret.
Modelling and simulation of biological processes in the context of
genomics, Autrans (France), March 18 - 21, 2002.
PaLaDeM : a Pattern Language for a Decision
Making System in Medicine (ps abstract).
M. Beurton-Aimar et B. Le Blanc.
IPMU2000, 8th Conference on Information Processing
and Management of Uncertainty in Knowledge-Based Systems, Madrid
(Espagne), July 3 - 7, 2000.
A
Decision Making System in Inflammatory Rheumatology using Different
Reasoning Methods (ps abstract).
M. Beurton-Aimar, B. Le Blanc. International Journal of Computers and
their Applications, 6 (2): 73-77, 1999.
Medical KBS Design with Patterns (ps).
M. Beurton-Aimar. 9th Workshop for PhD Students
in Object Oriented Systems. Object-Oriented Technology, ECOOP'99
Workshops, Panels, and Posters, Lisbonne (Portugal), 14-18 juin
1999.
Lecture Notes in Computer Science 1743.
Using Patterns into the Conception
of a Medical KBS: LADRI, a Software for Diagnosis in Rheumatology. (ps)
M. Beurton-Aimar et B. Le
Blanc. Object-Oriented Technology, ECOOP'99 Workshops, Panels,
and Posters, Lisbonne (Portugal), 14-18 juin. Lecture Notes in Computer Science 1743,.
Designing Medical Knowledge-based System from Patterns. (ps abstract)
M. Beurton-Aimar et B. Le Blanc. Proceed. of
the 14th Int. Conference on Computers And Their Applications, pp
218-221, Cancun (Mexique), 7-9 avril, 1999.
LADRI: a Decision Making System in Inflammatory Rheumatology. (ps abstract)
M. Beurton-Aimar, B. Le Blanc et
J.P. Vernhes. Proceed. of the 7th Int. Conference on
Intelligent Systems, pp 51-56, Paris, 1-2 juillet, 1998.
Création d'une base de connaissances objet
pour l'aide au diagnostic en rhumatologie (1) (ps abstract).
M. Beurton-Aimar, J.P. Vernhes, B. Le Blanc, J. Dehais
et R. Salamon. 10ème congrès français de rhumatologie. Rev. du rhumatisme, 11 : 762, 1997.
Logiciel d'aide au diagnostic en rhumatologie inflammatoire (2) (ps abstract).
J.P. Vernhes, M. Beurton-Aimar, B. Le Blanc, J. Dehais
et R. Salamon. 10ème congrès français
de rhumatologie. Rev. du rhumatisme, 11 : 763, 1997.
Modélisation Objet et Aide au Diagnostic : Application à la Rhumatologie Inflammatoire (ps abstract).
M. Beurton-Aimar, J.P. Vernhes, B. Le Blanc, J. Dehais,
2ème Colloque de Sciences Cognitives façade atlantique,
COGNITIQUES/Cognitics, série des sciences cognitives appliquées, 2 : 175, 1996.
Multipoint linkage analysis using
the WPC statistic (ps abstract).
D. Commenges, M. Beurton-Aimar. Genetic
Epidemiology, 17 : 515-519, 1999.
WPC Test based on randomization for analyzing quantitative traits
on simulated pedigrees (ps abstract).
D. Commenges, M. Beurton-Aimar. Genetic
Epidemiology, 14 : 971-4, 1997.